Contact Map WebViewer
(or shortly, CMWeb) is an online tool for studying basic properties of residue-residue contact formation and contact clusters.
CMWeb can be used
- for inspecting proteins only with 3D structure
- for visualizing contact maps
- for linking contacts and displaying them in 3D structures and in
multiple sequence alignments
- for predicting residue contacts using various contact prediction methods (currently five prediction methods are implemented)
- for calculating various statistics on contacts.
CMWeb server utilizes
- Wt Web Toolkit to provide a fully interactive platform for presenting contact maps and the various statistics made on contact maps
- OpenAstexViewer to visualize the structure of proteins
You can start using CMWeb
- by providing a PDB id on the left part of the top toolbar:
- by clicking the next arrow on the left part of the top toolbar:
- by uploading a structure file using the input menu:
- learn more about the usage of CMWeb with video tutorials
- the source code of the prediction methods are downloadable here
